Abstract
Hysterothylacium spp Larvae encysted within the mesenteries, peritoneum, and viscera, which is the perfect place to complete their life cycle. More than 4123 larval stages were isolated from 595 Saurida tumbil and Platycephalus indicus fish. This is a simple fact that these two species are feeding greedily. The prevalence of infection was 95.3- 100 %. Internal transcribed spacers (ITS) gene of nuclear rDNA (rDNA) were amplified by conventional PCR, using the primer sets NC5/NC2. The ITS sequences determined were compared using the algorithm BLASTn with those available in the National Center for Biotechnology Information (NCBI) database. Multiple sequence alignments (MSA) were performed by ClustalW. The result showed that there are 22 distinct taxa within the genus Hysterothylacium, followed by 4 common ancestors, with 6 clades grouped. The study showed Sequence heterogeneity in the ITS gene within Hysterothylacium spp. of nematode parasite collected from Saurida tumbil and Platycephalus indicus fish. Moreover, genetic homogeneity between the population of the Arabian Gulf and other regions seemed different through the high levels of gene flow observed somewhat in this qualitative diversity. The most important of which may be the impact of climate.
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Introduction
Saurida tumbil (Bloch, 1795) Greater Lizardfish is widely distributed in the Indo-West Pacific from the east coast of Africa, the Red Sea to eastern Australia, found in shallow coastal sandy or muddy bottoms (1). It feeds on fishes, crustaceans, and squids, whereas the Platycephalus indicus, also called the bar-tailed flathead, is found in the Indian and western Pacific oceans. The species has been recorded in the Mediterranean, having invaded as a Lessepsian migrant through the Suez Canal (1). They live on sandy and muddy bottoms of coastal waters, including estuaries, and juveniles have even been taken in freshwater. It is a commercial fish species (1). Hysterothylacium species belonging to the Raphidascarididae family are the most widespread fish-parasitizing marine ascaridoids (2,3). The genus Hysterothylacium includes about 101 species reported in marine and freshwater (4). Eighteen Hysterothylacium larval types have been described worldwide (5-14). A previous essential study of the nematode parasites of marine fishes from Kuwait conducted over 3 years from 1992 to 1995 suggested an apparent convergence of the present eight types - KA-KH - of Hysterothylacium spp. (15). The lack of information on the genetic diversity and polymorphisms of the nematode group, which provides a limited morphology, makes them difficult to identify specifically (5).
So, this study aims to provide new information on the diverse structures population and follow molecular heterogeneity using nuclear ribosomal DNA spacers analysis.
Materials and methods
Ethical approve
The care of experimental animals was consistent with the Republic of Iraq animal welfare laws, guidelines, and policies approved by the University of Basrah (Permit reference number 3/7/13302/2019). All fishes were collected from the fishing area consist of various locations in Iraqi marine waters (29°58 0 33 00 N48°28 0 20 E). Within fishing grounds for human consumption, with required permissions of the Directorate and supported by the Department of Veterinary Microbiology and Parasitology, College of Veterinary Medicine, and Marine Science Center, University of Basrah, Iraq
Fishing area
The fishing area consists of three various locations, Arabian Gulf (29° 58 0ʼ 33 00ʼʼ N48°28 ʼ 0 20ʼʼ E). This area is unique for fish feeding and spawning. Salinity concentrations in the region range from 40 to 43 ppt, and water temperature from 12.5 to 33.5 °C.
Collection of specimens
595 Saurida tumbil (Forster, 1801) and Platycephalus indicus (L., 1958) were examined, representing two genera of critical marine fishes. The gill nets fishing was used for collection. Nematodes were washed extensively by physiological saline (pH 7.4) and stored in 70-95% ethanol at -20 °C genomic DNA and PCR amplification. Fishes were identified according to Fish Base (16). Nematodes were identified using morphology (9). Some of the specimens were fixed in 4 % (v/v) hot formaldehyde solution (60°C), preserved in 70 % (v/v) ethanol, and post-fixed in 1 % osmium tetroxide, specimens were then dehydrated by incubating in a graded series of acetone ethanol concentrations (1:1), (1.5 - 0.5) and absolute acetone, 15 min each) for scanning electron microscope study (17). Genomic DNA was extracted from individual larvae by proteinase K treatment and purified using a mini-column (WizardDNA genomic DNA purification Kit, Promega, USA), according to the manufacturer's protocol. The internal transcribed spacers (ITS) of nuclear rDNA (rDNA) were amplified by PCR using the primer sets NC5/NC2 (Forward NC5 (5'-GTA GGT GAA CCT GCG GAA GGA TCA T3’) NC2 Revers (5'-TTA GTT TCT TTT CCT CCG CT-3') (18-19), respectively, under the same conditions as described previously (20). The ITS sequences determined were compared using the algorithm BLASTn with those available in the NCBI database. Phylogenetic relationships and the Evolutionary analysis used the Maximum Likelihood method. Initial tree for the heuristic search were obtained automatically by applying Neighbor-Join and BioNJ algorithms to a matrix of pairwise distances estimated using the Tamura & Nei model and then selecting the topology with superior log likelihood value. The DNA sequences were aligned for phylogenetic analysis using theClustalW computer program. The tree was drawn to scale, with Evolutionary studies conducted in MEGA X version 10.7.1 (21).
Results
Samples were heavily infected with the larval stage (n= 4,123) of two genera of important marine fishes, Saurida tumbil (Forster, 1801) and Platycephalus indicus (L., 1958) in the Arabian gulf, that showed encapsulated within the mesenteries, peritoneum, and viscera, with a prevalence of infection (91.11 to 100 %) (Table 1) (Figure 1).
Table 1: Fish species, prevalence, the intensity of infection, and total numbers of nematodes in collected fish
Host |
Common name |
Total larvae. |
Intensity |
Prevalence % |
Infection |
No. of fish Exam |
Saurida tumbil |
Greater lizardfish |
3360 |
12 |
100 |
280 |
280 |
Platycephalus indicus |
Bartail flathead |
763 |
2.65 |
91.11 |
287 |
315 |
Figure 1: A: S. tumbil and B: P. indicus.
A detailed examination of the worms collected predominantly showed that they are anisakid larvae. They appeared under a light and scanning electron microscope (SEM) and were cylindrically bodied in a pointy shape at both ends. Lengths measured ranged from 10-20 mm. The front lots of each larva have a boring tooth and four lips that are not significantly distinct. The esophagus was in the anterior part with cylindrical striated muscle. A glandular ventriculus is present in the most larva, and their measurements varied from one sample examined to another based on the species (Figures 2 and 3).
Figure 2: Larvae (L3) of H. amoyense viewed under a stereomicroscope; (1) c: posterior end region of the larval stage morphotypes tail. (2) a: cephalic head region shows mouth opening and papillae; b: glandular ventriculus viewed. X=100. (3) Light microscopic Hysterothylacium sp. larval. X=400
Figure 3: Scanning electron micrographs of Hysterothylacium spp ) head with dorsal lip and ventral interlabium cephalic extremity with deep cuticular striations on the anterior end
Twenty-two representative specimens were subjected to molecular analysis. The sequences of rDNA ITS regions (ITS1-5.8S-ITS2) were submitted to GenBank under the accession numbers (Table 2). Nineteen specimens of H. amoyense, query similarity identities percentage was identities 99-100%. Two species of Hysterothylacium sp., with query similarity identities percentage of 98%, were recognized, and one species of Countraceacum muraenesoxi query similarity identities percentage was 913/917 (99) with Gap 4/917. Unfortunately, since no mature stages were recorded, this cannot be confirmed at the species level. The new larvae cannot be accurately identified at the species level because it is necessary to study the mature adult stage of the parasite, using male and female morphology and characterization of reproductive organs.
Table 2: Detailed information of Nematode species, GenBank Accession numbers provided by NCBI for the collected larvae of P. indicus and S. tumbil of Ascaridoid nematode species with their genetic data including reference source, identical %, GenBank (ITS) reference, and geographical locality
Nematode species |
GenBank |
Reference |
Identical (%) |
Gaps (%) |
GenBank |
Country |
H. amoyense |
MZ503498 |
36 |
912/912(100) |
0/912 |
MT02011.1 |
China |
H. amoyense |
MZ509280 |
37 |
913/913(100) |
0/913 |
MT020134.1 |
China |
Hysterothylacium sp. |
MZ509452 |
37 |
809/825(98) |
4/825 |
MT020132.1 |
China |
H. amoyense |
MW422786 |
37 |
915/916(99) |
1/916 |
MT020132.1 |
China |
H. amoyense |
MW423789 |
37 |
915/915(100) |
0/915 |
MT02011.1 |
China |
H. amoyense |
MW423785 |
37 |
896/899(99) |
3/899 |
MT020134.1 |
China |
C. muraenesoxi |
MW423788 |
37 |
913/917(99) |
4/917 |
MT020132.1 |
China |
H. amoyense. |
MW423773 |
36 |
917/920(99) |
3/920 |
MT020132.1 |
China |
H. amoyense |
MW423786 |
37 |
905/920(98) |
8/920 |
MF539813.1 |
China |
H. amoyense |
MW423794 |
2 |
909/918(99) |
4/918 |
MT020132.1 |
China |
H. amoyense |
MW423792 |
3 |
864/869(99) |
3/869 |
MF539813.1 |
China |
Hysterothylacium sp. |
MW423772 |
40 |
599/607(99) |
2/607 |
MK039147.1 |
North-E Atlantic |
H. amoyense |
MW404622 |
37 |
913/913(100) |
0/913 |
MT020134.1 |
China |
H. amoyense |
MW412565 |
36 |
830/830(100) |
0/830 |
MF539813.1 |
China |
H. amoyense |
MW404617 |
36 |
860/860(100) |
0/860 |
MF539813.1 |
China |
H. amoyense |
MW404615 |
37 |
915/915(100) |
0/915 |
MT020134.1 |
China |
H. amoyense |
MW404619 |
37 |
915/915(100) |
0/915 |
MT020134.1 |
China |
H.amoyense |
MW412836 |
2 |
862/870(99) |
0/870 |
MT020134.1 |
China |
H. amoyense |
MW412582 |
2 |
916/916(100) |
0/916 |
MT020134.1 |
China |
H. amoyense. |
MW453086 |
2 |
916/916(100) |
0/916 |
MT020134.1 |
China |
H. amoyense. |
MW423771 |
2 |
915/916(99) |
0/916 |
MT020134.1 |
China |
H. amoyense |
MW412588 |
2 |
912/912(100) |
0/912 |
MT020134.1 |
China |
The evolutionary relationships of taxa history were inferred using the Neighbor-Joining method (Figure 4). This analysis involved 24 nucleotide sequences. There were 1407 positions in the final datasete analysis.The results showed that there are 22 distinct taxa (taxon) with 4 common ancestors of parasites collection, with grouped 6 clades. With Hysterothylacium amoyense with 2 strong nodal support (bootstrap value = 88 %) and 7 sisters taxon.
Figure 4: Cladogram Maximum Neighbor-joining (MN) Phylogenetic of ascaridoid nematodes of larvae obtained (Rostellascaris spinicadatum and H.reliquens) were used as an outgroup.
Multiple alignments show genetic polymorphisms in the Nucleotide of anisakid nematodes within some specimens of Hysterothylacium spp. A small group of them show the effect of genetic polymorphisms on morphological appearance in terms of the structure of the parasite cuticle. However, many classifications have kept them within the same species (Figure 2). These genetic variations between individuals, apparently of the same species in the same host, may represent genetic variations at the species level, which can be transferred to new species. It represents the most significant gene diversity in the genus Hysterothylacium . which exhibits a very close relationship. Also, this mainly means that there is a considerable diversity of genetic variations at the individual level in the Raphidascarididae family, which may be due to the mutual fertilization of the occupied species belonging to the same family. The result also showed that the resilience of ecosystems of the Arabian Gulf was generally positive because of the high gene flow.
The ribosomal RNA encapsulates a wealth of evolutionary information, including genetic variation that can be used to discriminate between organisms at a wide range of taxonomic levels. Uses methods of molecular approaches in the understanding of the biodiversity and systematics of nematode parasites have been utilized for delimiting and identifying anisakid nematodes and also to reveal cryptic species, such as the members of the genus Anisakis (22,23). The genetic analysis of larvae in the present study has allowed the specific and genotypic identification and polymorphisms of larvae within single morphotypes based on matching their sequences with the data available in the NCBI.
The targeted DNA sequencing of the ITS region and use of additional genetic loci, such as the ITS-1 region and perhaps mitochondrial gene loci, might support further the specific identification of anisakid nematodes as accurate and efficient for large-scale studies (19,24,25). The analysis revealed four polymorphisms in the ITS region, and the molecular methods showed that each of these larval types was composed of different genotypes. Sequence identity of 100%; nucleotide difference = 0.00%). Thirteen of Hysterothylacium spp. were identified based on their molecular characterization showed that those specimens represent different taxon with Hysterothylacium amoyense (26,27).
Widely distributed species can show different patterns of genetic structuring influenced by geographic distance, history, and/or natural selection (28). The discrepancy between morphological and molecular identification of the same host larvae species cannot be readily explained. We ensured that the sequence types reported in the present study should correspond to the correct morphotypes. The presence of the same species of individuals possessing heterogeneous genotypes in the same host may cause these genetic differences at the species level, which is recorded by the current study.
According to Froese and Pauly (16), over 200 species of fish are found in Iraqi marine waters, many of which are edible. However, our knowledge of their parasites is poor (29). Although there have been reports of Hysterothylacium spp. in Iraqi marine fish, most of these are based on morphology only, providing a limited morphological description that makes specific identification difficult. This information needs to be updated to improve knowledge of the species and the effect of environmental changes on increasing temperatures and climate change. These conditions are essential for the distribution of this type of parasite (30). Higher infections with Raphidascarididae were found than that observed in Bander Abas, Hormozan province, located on the southern coast of Iran on the Arabian Gulf (9). Their study was of 600 fish belonging to five popular species of fish, including Otolithes ruber, Psettodes erumei, Saurida tumbil, Scomberomorus commerson, and Sphyraena jello. The targeted DNA sequencing of the ITS, ITS-1, and ITS-2 of the rDNA provides genetic markers for the accurate identification of a range of species of Ascaridoids (31-35). It appears that the nematode fauna of the Arabian Gulf shows few similarities with the fauna of the western Pacific Coast and adjacent seas. This also corresponds to the results of the current study, which shows many similarities with the fauna in the Arabian Gulf (27), in north-east Atlantic waters (30,36), and in China (37).
Conclusion
Larvae from the Arabian Gulf. Valid genetic data deposited in GenBank described here can be used to establish the phylogenetic relationships of Hysterothylacium spp. from the Arabian Gulf fish and the rest of the world. Moreover, further research using the same genetic markers is required to examine the genetic variability and population genetic structure within larvae and adults of the Hysterothylacium species.
Conflict of interest
The authors declare no conflicts of interest regarding this manuscript's publication and/or funding.
Acknowledgments
This study was supported by the Department of Veterinary Microbiology and Parasitology, a College of Veterinary Medicine, and Marine Science Center, University of Basrah, Iraq.